MolNFT v2 · #154934 · protein + DNA
MsDpo4-DNA complex 6
6JUS: “MsDpo4-DNA complex 6”. X-ray diffraction at 2.5, 2 ligands (2TM, MN). MolNFT v2 #154934 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6JUS
- Type
- protein + DNA
- Length
- 737 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.5
- Source
- Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155); SYNTHETIC CONSTRUCT
- UniProt
- A0QR77
- Ligands
- 2TM, MN
Structure
x-ray diffraction · resolution 2.5 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, F | — | protein | 347 | — | A0QR77 |
| B | — | dna | 13 | — | — |
| C, H | — | dna | 9 | — | — |
| G | — | dna | 12 | — | — |
Ligands and binding sites
- 2TM · 5'-O-[(S)-hydroxy{[(s)-hydroxy(phosphonooxy) phosphoryl]methyl}phosphoryl]cytidine · ligand · 2 copies · chains A, B, C, F, G, H
- MN · Manganese (II) ion · metal · 4 copies · chains A, C, F, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6JUS · MSDPO4-DNA complex 6 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0QR77
- Elsewhere: RCSB PDB 6JUS · PDBe 6JUS · UniProt A0QR77
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