MolNFT v2 · #154928 · protein + DNA
MsDpo4-DNA complex 2
6JUM: “MsDpo4-DNA complex 2”. X-ray diffraction at 1.78, 2 ligands (0KX, MG). MolNFT v2 #154928 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6JUM
- Type
- protein + DNA
- Length
- 737 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.78
- Source
- Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155); SYNTHETIC CONSTRUCT
- UniProt
- A0QR77
- Ligands
- 0KX, MG
Structure
x-ray diffraction · resolution 1.78 · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, F | — | protein | 347 | — | A0QR77 |
| H | — | dna | 8 | — | — |
| G | — | dna | 12 | — | — |
| C | — | dna | 10 | — | — |
| B | — | dna | 13 | — | — |
Ligands and binding sites
- 0KX · 2'-deoxy-5'-O-[(R)-hydroxy{[(r)-hydroxy(phosphonooxy) phosphoryl]amino}phosphoryl]cytidine · ligand · 2 copies · chains A, C, B, F, H, G
- MG · Magnesium ion · metal · 4 copies · chains A, C, F, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6JUM · MSDPO4-DNA complex 2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0QR77
- Elsewhere: RCSB PDB 6JUM · PDBe 6JUM · UniProt A0QR77
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