MolNFT v2 · #154460 · protein
K2U bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii
6JF5: “K2U bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii”. X-ray diffraction at 2, 2 ligands (K2U, ZN). MolNFT v2 #154460 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6JF5
- Type
- protein
- Length
- 303 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2
- Source
- Acinetobacter baumannii
- UniProt
- A0A098SKQ8
- Ligands
- K2U, ZN
Structure
x-ray diffraction · resolution 2 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 158 | — | A0A098SKQ8 |
| A | — | protein | 145 | — | A0A098SKQ8 |
Ligands and binding sites
- K2U · (3~{R},4~{R})-4-oxidanyl-3-(phenylmethyl)-4-(phenylmethylsulfanyl)butanoic acid · ligand · 2 copies · chains B, A
- ZN · Zinc ion · metal · 2 copies · chains B, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6JF5 · K2U bound crystal structure of class I type B peptide deformylase from acinetobacter… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A098SKQ8
- Elsewhere: RCSB PDB 6JF5 · PDBe 6JF5 · UniProt A0A098SKQ8
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