MolNFT v2 · #154345 · protein
Crystal structure of Sphingomonas sp. A1 peroxidase EfeB responsible for import of iron
6JBN: “Crystal structure of Sphingomonas sp. A1 peroxidase EfeB responsible for import of iron”. X-ray diffraction at 2.3, 2 ligands (HEM, OXY). MolNFT v2 #154345 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6JBN
- Type
- protein
- Length
- 781 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.3
- Source
- Sphingomonas sp. A1
- Ligands
- HEM, OXY
Structure
x-ray diffraction · resolution 2.3 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 391 | — | — |
| B | — | protein | 390 | — | — |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains A, B
- OXY · Oxygen molecule · ion · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 24 copies · chains A, B
- PEG · Di(hydroxyethyl)ether · additive · 5 copies · chains A, B
- PGE · Triethylene glycol · additive · 3 copies · chains B, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6JBN · Crystal structure of sphingomonas sp. A1 peroxidase efeb responsible for import of iron · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6JBN · PDBe 6JBN
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