MolNFT v2 · #153913 · protein

Crystal structure of SH3BP5-Rab11a

6IXV: “Crystal structure of SH3BP5-Rab11a”. X-ray diffraction at 3.8, 1 ligand (PO4). MolNFT v2 #153913 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6IXV
Type: protein
Length: 1,570 residues
Chains: 8
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 3.8
Source: Homo sapiens
UniProt: O60239, P62491
Ligands: PO4

Structure

x-ray diffraction · resolution 3.8 · 7 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	224	—	O60239
B	—	protein	226	—	O60239
C	—	protein	222	—	O60239
D	—	protein	226	—	O60239
E, F	—	protein	170	—	P62491
G	—	protein	165	—	P62491
H	—	protein	167	—	P62491

Ligands and binding sites

PO4 · Phosphate ion · ion · 3 copies · chains E, F, H

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6IXV · Crystal structure of SH3BP5-RAB11A · the same entry in another collection · chain H against H, TM-score 1.00
O60239 · AlphaFold monomer V2.0 prediction for SH3 domain-binding protein 5 (O60239) · a predicted model of the same protein · chain B against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O60239
Every structure of UniProt P62491
Elsewhere: RCSB PDB 6IXV · PDBe 6IXV · UniProt O60239 · UniProt P62491

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