MolNFT v2 · #152416 · protein

TarP-6RboP-(CH2)6NH2

6HNQ: “TarP-6RboP-(CH2)6NH2”. X-ray diffraction at 2.4, 3 ligands (FQ8, MG, CL). MolNFT v2 #152416 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6HNQ
Type: protein
Length: 3,772 residues
Chains: 12
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.4
Source: Staphylococcus aureus subsp. aureus N315
UniProt: A0A0H3JNB0
Ligands: FQ8, MG, CL

Structure

x-ray diffraction · resolution 2.4 · 8 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B, H	—	protein	318	—	A0A0H3JNB0
C	—	protein	312	—	A0A0H3JNB0
F	—	protein	317	—	A0A0H3JNB0
O	—	protein	316	—	A0A0H3JNB0
P	—	protein	300	—	A0A0H3JNB0
E, A	—	protein	317	—	A0A0H3JNB0
G, D, I	—	protein	314	—	A0A0H3JNB0
Q	—	protein	315	—	A0A0H3JNB0

Ligands and binding sites

FQ8 · [(2~{R},3~{S},4~{S})-2,3,4,5-tetrakis(oxidanyl)pentyl] [(2~{R},3~{R},4~{S})-2,3,4-tris(oxidanyl)-5-[oxidanyl-[(2~{R},3~{S},4~{S})-2,3,4-tris(oxidanyl)-5-phosphonooxy-pentoxy]phosphoryl]oxy-pentyl] hydrogen phosphate · ligand · 12 copies · chains B, C, F, O, P, E, G, Q, A, D, H, I
MG · Magnesium ion · metal · 4 copies · chains B, C, A, D, H, I
CL · Chloride ion · ion · 17 copies · chains B, E, F, G, Q, A, H, D, I

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6HNQ · Tarp-6RBOP-(CH2)6NH2 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0H3JNB0
Elsewhere: RCSB PDB 6HNQ · PDBe 6HNQ · UniProt A0A0H3JNB0

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