MolNFT v2 · #151737 · protein
Schmallenberg Virus Glycoprotein Gc Head Domain in Complex with scFv 4B6
6H3U: “Schmallenberg Virus Glycoprotein Gc Head Domain in Complex with scFv 4B6”. X-ray diffraction at 3.168, 4 ligands (NAG, MAN, BMA). MolNFT v2 #151737 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6H3U
- Type
- protein
- Length
- 954 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.168
- Source
- Bovine Schmallenberg virus; Mus musculus
- UniProt
- H2AM12
- Ligands
- NAG, MAN, BMA, FUC
Structure
x-ray diffraction · resolution 3.168 · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | — | protein | 121 | — | — |
| L | — | protein | 113 | — | — |
| A | — | protein | 246 | — | H2AM12 |
| B | — | protein | 245 | — | H2AM12 |
| M | — | protein | 107 | — | — |
| I | — | protein | 122 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 8 copies · chains A, B
- MAN · alpha-D-mannopyranose · sugar · 8 copies · chains A, B
- BMA · beta-D-mannopyranose · sugar · 2 copies
- FUC · alpha-L-fucopyranose · sugar · 2 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6H3U · Schmallenberg virus glycoprotein gc head domain in complex with scfv 4B6 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt H2AM12
- Elsewhere: RCSB PDB 6H3U · PDBe 6H3U · UniProt H2AM12
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.