MolNFT v2 · #151313 · protein
Structure of the AhlB pore of the tripartite alpha-pore forming toxin, AHL, from Aeromonas hydrophila.
6GRJ: “Structure of the AhlB pore of the tripartite alpha-pore forming toxin, AHL, from Aeromonas hydrophila.”. X-ray diffraction at 2.94, 3 ligands (NA, CL, PO4). MolNFT v2 #151313 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6GRJ
- Type
- protein
- Length
- 3,285 residues
- Chains
- 10
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.94
- Source
- Aeromonas hydrophila
- UniProt
- A0A081US78
- Ligands
- NA, CL, PO4
Structure
x-ray diffraction · resolution 2.94 · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| G, A, C | — | protein | 338 | — | A0A081US78 |
| J, B | — | protein | 322 | — | A0A081US78 |
| D | — | protein | 320 | — | A0A081US78 |
| E | — | protein | 338 | — | A0A081US78 |
| F | — | protein | 317 | — | A0A081US78 |
| H | — | protein | 337 | — | A0A081US78 |
| I | — | protein | 315 | — | A0A081US78 |
Ligands and binding sites
- NA · Sodium ion · metal · 10 copies · chains J, A, B, C, D, E, F, H, I
- CL · Chloride ion · ion · 27 copies · chains G, J, A, B, C, D, E, F, H, I
- PO4 · Phosphate ion · ion · 2 copies · chains G, J, E
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 14 copies · chains G, I, J, C, A, E, D, F, H, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6GRJ · Structure of the ahlb pore of the tripartite alpha-pore forming toxin, ahl, from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A081US78
- Elsewhere: RCSB PDB 6GRJ · PDBe 6GRJ · UniProt A0A081US78
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