MolNFT v2 · #151308 · protein

Crystal structure of the tandem DUF26 ectodomain from the Arabidopsis thaliana cysteine-rich receptor-like protein PDLP5.

6GRE: “Crystal structure of the tandem DUF26 ectodomain from the Arabidopsis thaliana cysteine-rich receptor-like…”. X-ray diffraction at 1.29, 4 ligands (AE3, NAG, NA). MolNFT v2 #151308 on GenesisL1: 3D structure, binding sites and…

PDB: 6GRE
Type: protein
Length: 412 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.29
Source: Arabidopsis thaliana
UniProt: Q8GUJ2
Ligands: AE3, NAG, NA, SO4

Structure

x-ray diffraction · resolution 1.29 · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	205	—	Q8GUJ2
B	—	protein	207	—	Q8GUJ2

Ligands and binding sites

AE3 · 2-(2-ethoxyethoxy)ethanol · ligand · chains A, B
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 7 copies · chains A, B
NA · Sodium ion · metal · 2 copies · chains A, B
SO4 · Sulfate ion · ion · 2 copies · chains A, B
EDO · 1,2-ethanediol · additive · 7 copies · chains A, B
GOL · Glycerol · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6GRE · Crystal structure of the tandem DUF26 ectodomain from the arabidopsis thaliana… · the same entry in another collection · chain A against A, TM-score 1.00
Q8GUJ2 · AlphaFold monomer V2.0 prediction for plasmodesmata-located protein 5 (Q8GUJ2) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8GUJ2
Elsewhere: RCSB PDB 6GRE · PDBe 6GRE · UniProt Q8GUJ2

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