MolNFT v2 · #149752 · protein
Photorhabdus asymbiotica lectin (PHL) in complex with synthetic C-fucoside
6FHY: “Photorhabdus asymbiotica lectin (PHL) in complex with synthetic C-fucoside”. X-ray diffraction at 1.86, 2 ligands (DS8, CL). MolNFT v2 #149752 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6FHY
- Type
- protein
- Length
- 686 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.86
- Source
- Photorhabdus asymbiotica
- UniProt
- C7BLE4
- Ligands
- DS8, CL
Structure
x-ray diffraction · resolution 1.86 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 342 | — | C7BLE4 |
| B | — | protein | 344 | — | C7BLE4 |
Ligands and binding sites
- DS8 · (2~{S},3~{S},4~{R},5~{S},6~{S})-2-[[(2~{S},4~{R}, 6~{R})-2-(hydroxymethyl)-6-oxidanyl-oxan-4-yl]methyl]-6-methyl-oxane-3,4,5-triol · ligand · 12 copies · chains A, B
- CL · Chloride ion · ion · chains A
- EDO · 1,2-ethanediol · additive · chains B
- PEG · Di(hydroxyethyl)ether · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6FHY · Photorhabdus asymbiotica lectin (phl) in complex with synthetic C- fucoside · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C7BLE4
- Elsewhere: RCSB PDB 6FHY · PDBe 6FHY · UniProt C7BLE4
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