GL1X · GenesisL1 explorer

MolNFT v2 · #148381 · protein + DNA

Crystal structure of SRY.hcGAS-21bp dsDNA complex

6EDB: “Crystal structure of SRY.hcGAS-21bp dsDNA complex”. X-ray diffraction at 3.209, 1 ligand (ZN). MolNFT v2 #148381 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6EDB
Type
protein + DNA
Length
466 residues
Chains
4
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
3.209
Source
Homo sapiens; SYNTHETIC CONSTRUCT
UniProt
Q05066, Q8N884
Ligands
ZN

Structure

x-ray diffraction · resolution 3.209 · 4 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein357—Q05066, Q8N884
B—protein67—Q05066, Q8N884
C—dna21——
D—dna21——

Ligands and binding sites

  • ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6EDB · Crystal structure of SRY.HCGAS-21BP dsdna complex · the same entry in another collection · chain A against A, TM-score 1.00
  • Q8N884 · AlphaFold monomer V2.0 prediction for cyclic gmp-AMP synthase (Q8N884) · a predicted model of the same protein · chain A against A, TM-score 0.98

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