MolNFT v2 · #148348 · protein

Vlm2 thioesterase domain wild type structure 1

6ECB: “Vlm2 thioesterase domain wild type structure 1”. X-ray diffraction at 1.7, 2 pockets (best druggability 0.70). MolNFT v2 #148348 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6ECB
Type: protein
Length: 263 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.7
Source: Streptomyces tsusimaensis
Molecule: Vlm2
EC: 3.1.2.-
UniProt: Q1PSF3
Pockets: 2 · best druggability 0.70

Structure

x-ray diffraction · resolution 1.7 · 1 distinct chain · 43% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Vlm2 (EC 3.1.2.-)	protein	263	43% helix, 14% strand	Q1PSF3

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	447	0.70	0.81	49	empty
2	70	0.31	0.74	20	empty

Compared structures

6ECB · VLM2 thioesterase domain wild type structure 1 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q1PSF3
Elsewhere: RCSB PDB 6ECB · PDBe 6ECB · UniProt Q1PSF3

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