MolNFT v2 · #147446 · protein
Yeast Ddi2 Cyanamide Hydratase
6DKA: “Yeast Ddi2 Cyanamide Hydratase”. X-ray diffraction at 2.901, 3 ligands (CNN, ZN, SO4). MolNFT v2 #147446 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6DKA
- Type
- protein
- Length
- 2,063 residues
- Chains
- 9
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.901
- Source
- Saccharomyces cerevisiae (strain YJM789)
- UniProt
- A7A1Y4
- Ligands
- CNN, ZN, SO4
Structure
x-ray diffraction · resolution 2.901 · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | — | protein | 230 | — | A7A1Y4 |
| D, G | — | protein | 229 | — | A7A1Y4 |
| E | — | protein | 230 | — | A7A1Y4 |
| F | — | protein | 232 | — | A7A1Y4 |
| H | — | protein | 227 | — | A7A1Y4 |
| I | — | protein | 226 | — | A7A1Y4 |
Ligands and binding sites
- CNN · Cyanamide · ligand · 7 copies · chains A, B, C, D, E, F, G
- ZN · Zinc ion · metal · 9 copies · chains A, B, C, D, E, F, G, H, I
- SO4 · Sulfate ion · ion · 26 copies · chains A, B, C, E, D, G, F, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6DKA · Yeast DDI2 cyanamide hydratase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7A1Y4
- Elsewhere: RCSB PDB 6DKA · PDBe 6DKA · UniProt A7A1Y4
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