MolNFT v2 · #146627 · protein
Structure of alpha-GSA[8,6P] bound by CD1d and in complex with the Va14Vb8.2 TCR
6CWE: “Structure of alpha-GSA[8,6P] bound by CD1d and in complex with the Va14Vb8.2 TCR”. X-ray diffraction at 2.2, 4 ligands (7LP, PLM, NAG). MolNFT v2 #146627 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6CWE
- Type
- protein
- Length
- 803 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.2
- Source
- Mus musculus
- UniProt
- A0A0R4J090, P01887
- Ligands
- 7LP, PLM, NAG, FUC
Structure
x-ray diffraction · resolution 2.2 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 267 | — | A0A0R4J090 |
| B | — | protein | 98 | — | P01887 |
| C | — | protein | 199 | — | — |
| D | — | protein | 239 | — | — |
Ligands and binding sites
- 7LP · (5R,6S,7S)-5,6-dihydroxy-7-(octanoylamino)-N-(6-phenylhexyl)-8-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]oxy}octanamide · ligand · chains A, C
- PLM · Palmitic acid · ligand · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 5 copies · chains A
- FUC · alpha-L-fucopyranose · sugar · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6CWE · Structure of alpha-GSA[8,6P] bound by CD1D and in complex with the VA14VB8.2 TCR · the same entry in another collection · chain A against A, TM-score 1.00
- P01887 · AlphaFold monomer V2.0 prediction for beta-2-microglobulin (P01887) · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0R4J090
- Every structure of UniProt P01887
- Elsewhere: RCSB PDB 6CWE · PDBe 6CWE · UniProt A0A0R4J090 · UniProt P01887
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