MolNFT v2 · #145942 · protein + DNA
Crystal structure MBD3 MBD domain in complex with methylated CpG DNA
6CC8: “Crystal structure MBD3 MBD domain in complex with methylated CpG DNA”. X-ray diffraction at 1.95, 1 ligand (UNX). MolNFT v2 #145942 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6CC8
- Type
- protein + DNA
- Length
- 190 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.95
- Source
- Homo sapiens; SYNTHETIC CONSTRUCT
- UniProt
- O95983
- Ligands
- UNX
Structure
x-ray diffraction · resolution 1.95 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 71 | — | O95983 |
| C, D, E, F | — | dna | 12 | — | — |
Ligands and binding sites
- UNX · Unknown atom or ion · ion · 12 copies · chains A, D, B, F, C, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6CC8 · Crystal structure MBD3 mbd domain in complex with methylated cpg DNA · the same entry in another collection · chain C against C, TM-score 1.00
- O95983 · AlphaFold monomer V2.0 prediction for methyl-cpg-binding domain protein 3 (O95983) · a predicted model of the same protein · chain A against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O95983
- Elsewhere: RCSB PDB 6CC8 · PDBe 6CC8 · UniProt O95983
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