MolNFT v2 · #141800 · protein
Structure of sfYFP66BPA
5YR3 · Yellow fluorescent protein: “Structure of sfYFP66BPA”. X-ray diffraction at 1.901, 2 pockets (best druggability 0.72). MolNFT v2 #141800 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YR3
- Type
- protein
- Length
- 224 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.901
- Source
- Aequorea victoria
- Molecule
- Yellow fluorescent protein
- UniProt
- A0A059PIR9
- Pockets
- 2 · best druggability 0.72
Structure
x-ray diffraction · resolution 1.901 · 1 distinct chain · 9% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Yellow fluorescent protein | protein | 224 | 9% helix, 52% strand | A0A059PIR9 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 109 | 0.72 | 0.93 | 28 | empty |
| 2 | 60 | 0.39 | 0.80 | 14 | empty |
Compared structures
- 5YR3 · Structure of SFYFP66BPA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A059PIR9
- Elsewhere: RCSB PDB 5YR3 · PDBe 5YR3 · UniProt A0A059PIR9
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