MolNFT v2 · #141678 · protein
Crystal structure of xylose isomerase from Piromyces sp. E2
5YN3: “Crystal structure of xylose isomerase from Piromyces sp. E2”. X-ray diffraction at 2.7, 1 ligand (MN). MolNFT v2 #141678 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YN3
- Type
- protein
- Length
- 1,740 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.7
- Source
- Piromyces sp. (strain E2)
- UniProt
- Q9P8C9
- Ligands
- MN
Structure
x-ray diffraction · resolution 2.7 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | — | protein | 435 | — | Q9P8C9 |
Ligands and binding sites
- MN · Manganese (II) ion · metal · 8 copies · chains A, B, C, D
- GOL · Glycerol · additive · 5 copies · chains A, D, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YN3 · Crystal structure of xylose isomerase from piromyces sp. E2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9P8C9
- Elsewhere: RCSB PDB 5YN3 · PDBe 5YN3 · UniProt Q9P8C9
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