MolNFT v2 · #141366 · protein
Ancestral myoglobin aMbWb' of Basilosaurus relative (polyphyly) imidazole-ligand
5YCJ: “Ancestral myoglobin aMbWb' of Basilosaurus relative (polyphyly) imidazole-ligand”. X-ray diffraction at 1.58, 1 ligand (HEM). MolNFT v2 #141366 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YCJ
- Type
- protein
- Length
- 311 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.58
- Source
- Physeter catodon
- Ligands
- HEM
Structure
x-ray diffraction · resolution 1.58 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 154 | — | — |
| B | — | protein | 157 | — | — |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains A, B
- IMD · Imidazole · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YCJ · Ancestral myoglobin ambwb' of basilosaurus relative (polyphyly) imidazole-ligand · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5YCJ · PDBe 5YCJ
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.