MolNFT v2 · #141161 · protein
V/A-type ATPase/synthase from Thermus thermophilus, rotational state 3.
5Y60: “V/A-type ATPase/synthase from Thermus thermophilus, rotational state 3.”. Electron microscopy at 7.5, 1 ligand (ADP). MolNFT v2 #141161 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5Y60
- Type
- protein
- Length
- 5,852 residues
- Chains
- 26
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 7.5
- Source
- Thermus thermophilus HB8
- UniProt
- Q56403, Q56404, O87880, P74903, Q5SIT5, P74901, P74902, Q5SIT6, Q5SIT7
- Ligands
- ADP
Structure
electron microscopy · resolution 7.5 · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | — | protein | 577 | — | Q56403 |
| D, E, F | — | protein | 459 | — | Q56404 |
| G | — | protein | 210 | — | O87880 |
| H | — | protein | 100 | — | P74903 |
| I, K | — | protein | 100 | — | Q5SIT5 |
| J, L | — | protein | 185 | — | P74901 |
| M | — | protein | 320 | — | P74902 |
| N | — | protein | 632 | — | Q5SIT6 |
| O, P, Q, R, S, T, U, V, W, X, Y, Z | — | protein | 76 | — | Q5SIT7 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains A, F, B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5Y60 · V/A-type ATPASE/SYNTHASE from thermus thermophilus, rotational state 3. · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q56403
- Every structure of UniProt Q56404
- Every structure of UniProt O87880
- Every structure of UniProt P74903
- Every structure of UniProt Q5SIT5
- Every structure of UniProt P74901
- Every structure of UniProt P74902
- Every structure of UniProt Q5SIT6
- Every structure of UniProt Q5SIT7
- Elsewhere: RCSB PDB 5Y60 · PDBe 5Y60 · UniProt Q56403 · UniProt Q56404 · UniProt O87880 · UniProt P74903 · UniProt Q5SIT5 · UniProt P74901 · UniProt P74902 · UniProt Q5SIT6 · UniProt Q5SIT7
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