MolNFT v2 · #141039 · protein
Crystal structure of native Dpb4-Dpb3
5Y26: “Crystal structure of native Dpb4-Dpb3”. X-ray diffraction at 2.003. MolNFT v2 #141039 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5Y26
- Type
- protein
- Length
- 189 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.003
- Source
- Schizosaccharomyces pombe (strain 972 / ATCC 24843)
- UniProt
- P87174, C6Y4D0
Structure
x-ray diffraction · resolution 2.003 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 97 | — | P87174 |
| B | — | protein | 92 | — | C6Y4D0 |
Ligands and binding sites
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5Y26 · Crystal structure of native DPB4-DPB3 · the same entry in another collection · chain A against A, TM-score 1.00
- P87174 · AlphaFold monomer V2.0 prediction for DNA polymerase epsilon subunit D (P87174) · a predicted model of the same protein · chain A against A, TM-score 0.96
- C6Y4D0 · AlphaFold monomer V2.0 prediction for DNA polymerase epsilon subunit C (C6Y4D0) · a predicted model of the same protein · chain B against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P87174
- Every structure of UniProt C6Y4D0
- Elsewhere: RCSB PDB 5Y26 · PDBe 5Y26 · UniProt P87174 · UniProt C6Y4D0
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