MolNFT v2 · #140226 · protein
Crystal structure of tertiary complex of TdsC from Paenibacillus sp. A11-2 with FMN and dibenzothiophene sulfoxide
5XDG: “Crystal structure of tertiary complex of TdsC from Paenibacillus sp. A11-2 with FMN and dibenzothiophene…”. X-ray diffraction at 1.747, 3 ligands (FMN, 83U, SO4). MolNFT v2 #140226 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5XDG
- Type
- protein
- Length
- 1,600 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.747
- Source
- Paenibacillus sp. A11-2
- UniProt
- Q9LBX2
- Ligands
- FMN, 83U, SO4
Structure
x-ray diffraction · resolution 1.747 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | — | protein | 400 | — | Q9LBX2 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · 4 copies · chains A, B, C, D
- 83U · dibenzothiophene 5-oxide · ligand · 4 copies · chains A, B, C, D
- SO4 · Sulfate ion · ion · 5 copies · chains A, B, C, D
- GOL · Glycerol · additive · 2 copies · chains B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5XDG · Crystal structure of tertiary complex of tdsc from paenibacillus sp. A11-2 with FMN and… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9LBX2
- Elsewhere: RCSB PDB 5XDG · PDBe 5XDG · UniProt Q9LBX2
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