MolNFT v2 · #138144 · protein
RHCC in complex with Naphthalene
5VKF: “RHCC in complex with Naphthalene”. X-ray diffraction at 2.752, 2 ligands (NPY, SO4). MolNFT v2 #138144 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VKF
- Type
- protein
- Length
- 208 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.752
- Source
- Staphylothermus marinus
- UniProt
- Q54436
- Ligands
- NPY, SO4
Structure
x-ray diffraction · resolution 2.752 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | — | protein | 52 | — | Q54436 |
Ligands and binding sites
- NPY · Naphthalene · ligand · 2 copies · chains A, B, C, D
- SO4 · Sulfate ion · ion · 3 copies · chains B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VKF · Rhcc in complex with naphthalene · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q54436
- Elsewhere: RCSB PDB 5VKF · PDBe 5VKF · UniProt Q54436
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