MolNFT v2 · #137711 · protein
Crystal Structure of the Second beta-Prism Domain of RbmC from V. cholerae Bound to N-acetylglucosaminyl-beta-1,2-mannose
5V6K · Hemolysin-related protein: “Crystal Structure of the Second beta-Prism Domain of RbmC from V. cholerae Bound to…”. X-ray diffraction at 1.8, 2 ligands (MAN, NAG). MolNFT v2 #137711 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5V6K
- Type
- protein
- Length
- 137 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.8
- Source
- Vibrio cholerae O1 biovar El Tor str. N16961
- Molecule
- Hemolysin-related protein
- UniProt
- Q9KTH2
- Ligands
- MAN, NAG
Structure
x-ray diffraction · resolution 1.8 · 1 distinct chain · 0% helix, 56% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hemolysin-related protein | protein | 137 | 0% helix, 56% strand | Q9KTH2 |
Ligands and binding sites
- MAN · alpha-D-mannopyranose · sugar · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5V6K · Crystal structure of the second beta-prism domain of rbmc from V. cholerae bound to… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KTH2
- Elsewhere: RCSB PDB 5V6K · PDBe 5V6K · UniProt Q9KTH2
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