MolNFT v2 · #136968 · protein
CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 3
5UK1: “CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 3”. Electron microscopy at 4.8, 2 ligands (NAG, BMA). MolNFT v2 #136968 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5UK1
- Type
- protein
- Length
- 2,196 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 4.8
- Source
- Homo sapiens; Influenza A virus; Influenza A virus (A/Solomon…
- UniProt
- A7UPX0
- Ligands
- NAG, BMA
Structure
electron microscopy · resolution 4.8 · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, E | — | protein | 323 | — | A7UPX0 |
| B, D, F | — | protein | 173 | — | A7UPX0 |
| G, H, I | — | protein | 236 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 30 copies · chains A, C, E, B, D, F
- BMA · beta-D-mannopyranose · sugar · 3 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5UK1 · Cryoem structure of an influenza virus receptor-binding site antibody- antigen interface… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7UPX0
- Elsewhere: RCSB PDB 5UK1 · PDBe 5UK1 · UniProt A7UPX0
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