MolNFT v2 · #129962 · protein
Crystal Structure of Ectoine Synthase from P. lautus
5ONO · L-ectoine synthase: “Crystal Structure of Ectoine Synthase from P. lautus”. X-ray diffraction at 2.5, 2 ligands (4CS, FE), 1 pocket (best druggability 0.78). MolNFT v2 #129962 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5ONO
- Type
- protein
- Length
- 138 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.5
- Source
- Paenibacillus lautus
- Molecule
- L-ectoine synthase
- EC
- 4.2.1.108
- UniProt
- A0A1R1AV52
- Ligands
- 4CS, FE
- Pockets
- 1 · best druggability 0.78
Structure
x-ray diffraction · resolution 2.5 · 1 distinct chain · 9% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | L-ectoine synthase (EC 4.2.1.108) | protein | 138 | 9% helix, 43% strand | A0A1R1AV52 |
Ligands and binding sites
- 4CS · (4S)-2-methyl-1,4,5,6-tetrahydropyrimidine-4-carboxylic acid · ligand · chains A
- FE · Fe (III) ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 89 | 0.78 | 0.99 | 27 | FE, 4CS |
Compared structures
- 5ONO · Crystal structure of ectoine synthase from P. lautus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1R1AV52
- Elsewhere: RCSB PDB 5ONO · PDBe 5ONO · UniProt A0A1R1AV52
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