MolNFT v2 · #129920 · protein
Crystal structure of GP2 from Lassa virus in a post fusion conformation
5OMI: “Crystal structure of GP2 from Lassa virus in a post fusion conformation”. X-ray diffraction at 2.56, 3 ligands (NAG, NA, CL). MolNFT v2 #129920 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5OMI
- Type
- protein
- Length
- 325 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.56
- Source
- Lassa mammarenavirus
- UniProt
- A0A097F3Y1
- Ligands
- NAG, NA, CL
Structure
x-ray diffraction · resolution 2.56 · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 107 | — | A0A097F3Y1 |
| B | — | protein | 108 | — | A0A097F3Y1 |
| C | — | protein | 110 | — | A0A097F3Y1 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A, B, C
- NA · Sodium ion · metal · chains C
- CL · Chloride ion · ion · 2 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5OMI · Crystal structure of GP2 from lassa virus in a post fusion conformation · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A097F3Y1
- Elsewhere: RCSB PDB 5OMI · PDBe 5OMI · UniProt A0A097F3Y1
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