MolNFT v2 · #129374 · protein + DNA
Structure of ScPif1 in complex with GGGTTTT and ADP-AlF4
5O6B: “Structure of ScPif1 in complex with GGGTTTT and ADP-AlF4”. X-ray diffraction at 2.029, 4 ligands (ADP, ALF, MG). MolNFT v2 #129374 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5O6B
- Type
- protein + DNA
- Length
- 1,047 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.029
- Source
- Saccharomyces cerevisiae (strain ATCC 204508 / S288c); SYNTHETIC CONSTRUCT
- UniProt
- P07271
- Ligands
- ADP, ALF, MG, PO4
Structure
x-ray diffraction · resolution 2.029 · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 528 | — | P07271 |
| B | — | protein | 507 | — | P07271 |
| C, D | — | dna | 6 | — | — |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains A, B
- ALF · Tetrafluoroaluminate ion · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
- PO4 · Phosphate ion · ion · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5O6B · Structure of SCPIF1 in complex with gggtttt and ADP-ALF4 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07271
- Elsewhere: RCSB PDB 5O6B · PDBe 5O6B · UniProt P07271
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