MolNFT v2 · #129325 · protein
P.vivax NMT with aminomethylindazole and quinoline inhibitors bound
5O4V: “P.vivax NMT with aminomethylindazole and quinoline inhibitors bound”. X-ray diffraction at 1.7, 6 ligands (NHW, 9K2, 9KZ). MolNFT v2 #129325 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5O4V
- Type
- protein
- Length
- 1,138 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.7
- Source
- Plasmodium vivax
- UniProt
- A5K1A2
- Ligands
- NHW, 9K2, 9KZ, MG, SO4, CL
Structure
x-ray diffraction · resolution 1.7 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 385 | — | A5K1A2 |
| C | — | protein | 368 | — | A5K1A2 |
Ligands and binding sites
- NHW · 2-oxopentadecyl-CoA · ligand · 3 copies · chains A, B, C
- 9K2 · 1-[5-(4-fluoranyl-2-methyl-phenyl)-1~{H}-indazol-3-yl]-~{N},~{N}-dimethyl-methanamine · ligand · 3 copies · chains A, B, C
- 9KZ · ethyl 2,4-dimethylquinoline-3-carboxylate · ligand · 3 copies · chains A, B, C
- MG · Magnesium ion · metal · 3 copies · chains A, B, C
- SO4 · Sulfate ion · ion · 4 copies · chains A, B, C
- CL · Chloride ion · ion · 3 copies · chains A, B, C
- DMS · Dimethyl sulfoxide · additive · 3 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5O4V · P.VIVAX nmt with aminomethylindazole and quinoline inhibitors bound · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A5K1A2
- Elsewhere: RCSB PDB 5O4V · PDBe 5O4V · UniProt A5K1A2
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