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MolNFT v2 · #129325 · protein

P.vivax NMT with aminomethylindazole and quinoline inhibitors bound

5O4V: “P.vivax NMT with aminomethylindazole and quinoline inhibitors bound”. X-ray diffraction at 1.7, 6 ligands (NHW, 9K2, 9KZ). MolNFT v2 #129325 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
5O4V
Type
protein
Length
1,138 residues
Chains
3
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
1.7
Source
Plasmodium vivax
UniProt
A5K1A2
Ligands
NHW, 9K2, 9KZ, MG, SO4, CL

Structure

x-ray diffraction · resolution 1.7 · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, B—protein385—A5K1A2
C—protein368—A5K1A2

Ligands and binding sites

  • NHW · 2-oxopentadecyl-CoA · ligand · 3 copies · chains A, B, C
  • 9K2 · 1-[5-(4-fluoranyl-2-methyl-phenyl)-1~{H}-indazol-3-yl]-~{N},~{N}-dimethyl-methanamine · ligand · 3 copies · chains A, B, C
  • 9KZ · ethyl 2,4-dimethylquinoline-3-carboxylate · ligand · 3 copies · chains A, B, C
  • MG · Magnesium ion · metal · 3 copies · chains A, B, C
  • SO4 · Sulfate ion · ion · 4 copies · chains A, B, C
  • CL · Chloride ion · ion · 3 copies · chains A, B, C
  • DMS · Dimethyl sulfoxide · additive · 3 copies · chains A, B, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5O4V · P.VIVAX nmt with aminomethylindazole and quinoline inhibitors bound · the same entry in another collection · chain A against A, TM-score 1.00

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