MolNFT v2 · #128310 · protein

Torpedo californica acetylcholinesterase in complex with a non-chiral donepezil-like compound 20

5NAU: “Torpedo californica acetylcholinesterase in complex with a non-chiral donepezil-like compound 20”. X-ray diffraction at 2.25, 5 ligands (DZ0, NAG, BMA). MolNFT v2 #128310 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5NAU
Type: protein
Length: 532 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.25
Source: Tetronarce californica
UniProt: P04058
Ligands: DZ0, NAG, BMA, MAN, FUC

Structure

x-ray diffraction · resolution 2.25 · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	532	—	P04058

Ligands and binding sites

DZ0 · (2~{E})-5-methoxy-2-[[1-(phenylmethyl)piperidin-4-yl]methylidene]-3~{H}-inden-1-one · ligand · chains A
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 5 copies · chains A
BMA · beta-D-mannopyranose · sugar · 2 copies
MAN · alpha-D-mannopyranose · sugar · 2 copies
FUC · alpha-L-fucopyranose · sugar

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5NAU · Torpedo californica acetylcholinesterase in complex with a non-chiral donepezil-like… · the same entry in another collection · chain A against A, TM-score 1.00
P04058 · AlphaFold monomer V2.0 prediction for acetylcholinesterase (P04058) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P04058
Elsewhere: RCSB PDB 5NAU · PDBe 5NAU · UniProt P04058

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