MolNFT v2 · #125924 · protein
Structure of Polyphosphate Kinase from Meiothermus ruber bound to AMP
5LCD: “Structure of Polyphosphate Kinase from Meiothermus ruber bound to AMP”. X-ray diffraction at 2.66, 4 ligands (AMP, MG, SO4). MolNFT v2 #125924 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LCD
- Type
- protein
- Length
- 1,028 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.66
- Source
- Meiothermus ruber H328
- UniProt
- A0A0S7ASE9
- Ligands
- AMP, MG, SO4, PO4
Structure
x-ray diffraction · resolution 2.66 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 256 | — | A0A0S7ASE9 |
| B, D | — | protein | 258 | — | A0A0S7ASE9 |
Ligands and binding sites
- AMP · Adenosine monophosphate · ligand · 4 copies · chains A, B, C, D
- MG · Magnesium ion · metal · chains C
- SO4 · Sulfate ion · ion · 10 copies · chains A, B, C, D
- PO4 · Phosphate ion · ion · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5LCD · Structure of polyphosphate kinase from meiothermus ruber bound to AMP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0S7ASE9
- Elsewhere: RCSB PDB 5LCD · PDBe 5LCD · UniProt A0A0S7ASE9
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