MolNFT v2 · #125139 · protein
Structure of Nanoparticle Released from Enveloped Protein Nanoparticle
5KP9 · Epn-01*: “Structure of Nanoparticle Released from Enveloped Protein Nanoparticle”. Electron microscopy at 5.7, 1 pocket (best druggability 0.30). MolNFT v2 #125139 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KP9
- Type
- protein
- Length
- 202 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 5.7
- Source
- Human immunodeficiency virus type 1 group M subtype B (isolate BH10)…
- Molecule
- Epn-01*
- UniProt
- Q9WXS1, P03347
- Pockets
- 1 · best druggability 0.30
Structure
electron microscopy · resolution 5.7 · 1 distinct chain · 51% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Epn-01* | protein | 202 | 51% helix, 17% strand | Q9WXS1, P03347 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 64 | 0.30 | 0.75 | 17 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 5KP9 · Structure of nanoparticle released from enveloped protein nanoparticle · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WXS1
- Every structure of UniProt P03347
- Elsewhere: RCSB PDB 5KP9 · PDBe 5KP9 · UniProt Q9WXS1 · UniProt P03347
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