MolNFT v2 · #124726 · protein
Crystal structure of the aromatic prenyltransferase AtaPT from Aspergillus terreus A8-4 in complex with dimethylallyl S-thiolodiphosphate and (-)-butyrolactone II
5KD6: “Crystal structure of the aromatic prenyltransferase AtaPT from Aspergillus terreus A8-4 in complex with…”. X-ray diffraction at 1.84, 2 ligands (DST, LBU). MolNFT v2 #124726 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5KD6
- Type
- protein
- Length
- 799 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.84
- Source
- Aspergillus terreus
- Ligands
- DST, LBU
Structure
x-ray diffraction · resolution 1.84 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 400 | — | — |
| B | — | protein | 399 | — | — |
Ligands and binding sites
- DST · Dimethylallyl S-thiolodiphosphate · ligand · 2 copies · chains A, B
- LBU · methyl (2S)-4-hydroxy-3-(4-hydroxyphenyl)-2-[(4-hydroxyphenyl)methyl]-5-oxo-2,5-dihydrofuran-2-carboxylate · ligand · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KD6 · Crystal structure of the aromatic prenyltransferase atapt from aspergillus terreus A8-4… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5KD6 · PDBe 5KD6
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