MolNFT v2 · #124576 · protein
Zn2+/Tetrahedral intermediate-bound R289A 5-nitroanthranilate aminohydrolase
5K8P: “Zn2+/Tetrahedral intermediate-bound R289A 5-nitroanthranilate aminohydrolase”. X-ray diffraction at 2.2, 2 ligands (6R8, ZN). MolNFT v2 #124576 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5K8P
- Type
- protein
- Length
- 3,380 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.2
- Source
- Bradyrhizobium sp.
- UniProt
- D3WZ85
- Ligands
- 6R8, ZN
Structure
x-ray diffraction · resolution 2.2 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, G | — | protein | 421 | — | D3WZ85 |
| C, H | — | protein | 422 | — | D3WZ85 |
| D, F | — | protein | 425 | — | D3WZ85 |
| E | — | protein | 423 | — | D3WZ85 |
Ligands and binding sites
- 6R8 · (6~{R})-6-azanyl-3-nitro-6-oxidanyl-cyclohexa-1,3-diene-1-carboxylic acid · ligand · 6 copies · chains A, B, C, F, D, E, G, H
- ZN · Zinc ion · metal · 8 copies · chains A, B, C, D, E, F, G, H
- GOL · Glycerol · additive · 8 copies · chains A, C, B, G, D, H, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5K8P · ZN2+/TETRAHEDRAL intermediate-bound R289A 5-nitroanthranilate aminohydrolase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D3WZ85
- Elsewhere: RCSB PDB 5K8P · PDBe 5K8P · UniProt D3WZ85
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