MolNFT v2 · #122612 · protein

CYP106A2 with substrate abietic acid

5IKI: “CYP106A2 with substrate abietic acid”. X-ray diffraction at 2.4, 2 ligands (HEM, A9H). MolNFT v2 #122612 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5IKI
Type: protein
Length: 782 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.4
Source: Bacillus megaterium
UniProt: Q06069
Ligands: HEM, A9H

Structure

x-ray diffraction · resolution 2.4 · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	383	—	Q06069
B	—	protein	399	—	Q06069

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains A, B
A9H · Abietic acid · ligand · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5IKI · CYP106A2 with substrate abietic acid · the same entry in another collection · chain A against A, TM-score 1.00
Q06069 · AlphaFold monomer V2.0 prediction for cytochrome P450(MEG) (Q06069) · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q06069
Elsewhere: RCSB PDB 5IKI · PDBe 5IKI · UniProt Q06069

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