MolNFT v2 · #122385 · protein
Crystal structure of an oxidoreductase from Burkholderia vietnamiensis in complex with NADP
5IDY: “Crystal structure of an oxidoreductase from Burkholderia vietnamiensis in complex with NADP”. X-ray diffraction at 1.85, 3 ligands (NAP, SO4, CL). MolNFT v2 #122385 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5IDY
- Type
- protein
- Length
- 526 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.85
- Source
- Burkholderia vietnamiensis (strain G4 / LMG 22486)
- UniProt
- A4JGH3
- Ligands
- NAP, SO4, CL
Structure
x-ray diffraction · resolution 1.85 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 262 | — | A4JGH3 |
| B | — | protein | 264 | — | A4JGH3 |
Ligands and binding sites
- NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · 2 copies · chains A, B
- SO4 · Sulfate ion · ion · 3 copies · chains A, B
- CL · Chloride ion · ion · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5IDY · Crystal structure of an oxidoreductase from burkholderia vietnamiensis in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A4JGH3
- Elsewhere: RCSB PDB 5IDY · PDBe 5IDY · UniProt A4JGH3
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.