MolNFT v2 · #120596 · protein
Crystal structure of the membrane-distal domain of mouse lysosome-associated membrane protein 2 (LAMP-2)
5GV3: “Crystal structure of the membrane-distal domain of mouse lysosome-associated membrane protein 2 (LAMP-2)”. X-ray diffraction at 2.096, 2 ligands (NAG, ZN). MolNFT v2 #120596 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5GV3
- Type
- protein
- Length
- 324 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.096
- Source
- Mus musculus
- UniProt
- P17047
- Ligands
- NAG, ZN
Structure
x-ray diffraction · resolution 2.096 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 161 | — | P17047 |
| B | — | protein | 163 | — | P17047 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 10 copies · chains A, B
- ZN · Zinc ion · metal · 15 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5GV3 · Crystal structure of the membrane-distal domain of mouse lysosome- associated membrane… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P17047
- Elsewhere: RCSB PDB 5GV3 · PDBe 5GV3 · UniProt P17047
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