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MolNFT v2 · #120004 · protein

Ligand complex of RORg LBD

5G44: “Ligand complex of RORg LBD”. X-ray diffraction at 1.84, 4 ligands (I6G, SWX, YTZ). MolNFT v2 #120004 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
5G44
Type
protein
Length
257 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
1.84
Source
HOMO SAPIENS
UniProt
P51449
Ligands
I6G, SWX, YTZ, NA

Structure

x-ray diffraction · resolution 1.84 · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein245—P51449
C—protein12——

Ligands and binding sites

  • I6G · 8-methoxy-2,3-dimethylquinoxalin-5-ol · ligand · chains A
  • SWX · (4-pyrimidin-5-ylphenyl)methanol · ligand · chains A
  • YTZ · 4-amino-N-(1,3-thiazol-2-yl)benzenesulfonamide · ligand · chains A
  • NA · Sodium ion · metal · chains A
  • DMS · Dimethyl sulfoxide · additive · chains A, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5G44 · Ligand complex of rorg lbd · the same entry in another collection · chain A against A, TM-score 1.00
  • P51449 · AlphaFold monomer V2.0 prediction for nuclear receptor ror-gamma (P51449) · a predicted model of the same protein · chain A against A, TM-score 0.99

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