MolNFT v2 · #118925 · protein
ROK repressor Lmo0178 from Listeria monocytogenes bound to inducer
5F7R: “ROK repressor Lmo0178 from Listeria monocytogenes bound to inducer”. X-ray diffraction at 1.85, 4 ligands (GLC, ZN, CL). MolNFT v2 #118925 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5F7R
- Type
- protein
- Length
- 610 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.85
- Source
- Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
- UniProt
- Q8YAF1
- Ligands
- GLC, ZN, CL, PO4
Structure
x-ray diffraction · resolution 1.85 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| E | — | protein | 304 | — | Q8YAF1 |
| A | — | protein | 306 | — | Q8YAF1 |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · 4 copies · chains E, A
- ZN · Zinc ion · metal · 2 copies · chains E, A
- CL · Chloride ion · ion · chains E, A
- PO4 · Phosphate ion · ion · chains E, A
- PEG · Di(hydroxyethyl)ether · additive · chains E, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5F7R · Rok repressor LMO0178 from listeria monocytogenes bound to inducer · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8YAF1
- Elsewhere: RCSB PDB 5F7R · PDBe 5F7R · UniProt Q8YAF1
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