MolNFT v2 · #118834 · protein
The crystal structure of an epoxide hydrolase from Streptomyces carzinostaticus subsp. neocarzinostaticus
5F4Z: “The crystal structure of an epoxide hydrolase from Streptomyces carzinostaticus subsp. neocarzinostaticus”. X-ray diffraction at 1.82, 1 ligand (5V4). MolNFT v2 #118834 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5F4Z
- Type
- protein
- Length
- 1,944 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.82
- Source
- Streptomyces carzinostaticus subsp. neocarzinostaticus
- UniProt
- Q84HB1
- Ligands
- 5V4
Structure
x-ray diffraction · resolution 1.82 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, E | — | protein | 388 | — | Q84HB1 |
| B | — | protein | 390 | — | Q84HB1 |
| C | — | protein | 387 | — | Q84HB1 |
| D | — | protein | 391 | — | Q84HB1 |
Ligands and binding sites
- 5V4 · (1~{R},2~{R})-2,3-dihydro-1~{H}-indene-1,2-diol · ligand · 5 copies · chains A, B, C, D, E
- GOL · Glycerol · additive · 7 copies · chains A, B, C, E
- ACT · Acetate ion · additive · 2 copies · chains A, B, D
- PEG · Di(hydroxyethyl)ether · additive · chains A
- PG4 · Tetraethylene glycol · additive · chains A, B
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5F4Z · The crystal structure of an epoxide hydrolase from streptomyces carzinostaticus subsp.… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q84HB1
- Elsewhere: RCSB PDB 5F4Z · PDBe 5F4Z · UniProt Q84HB1
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