MolNFT v2 · #118493 · protein
Pyruvate decarboxylase from zymobacter palmae
5EUJ: “Pyruvate decarboxylase from zymobacter palmae”. X-ray diffraction at 2.15, 2 ligands (TPP, MG). MolNFT v2 #118493 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5EUJ
- Type
- protein
- Length
- 13,322 residues
- Chains
- 24
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.15
- Source
- Zymobacter palmae
- UniProt
- Q8KTX6
- Ligands
- TPP, MG
Structure
x-ray diffraction · resolution 2.15 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, F, G, H, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X | — | protein | 555 | — | Q8KTX6 |
| E, I | — | protein | 556 | — | Q8KTX6 |
Ligands and binding sites
- TPP · Thiamine diphosphate · ligand · 24 copies · chains A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X
- MG · Magnesium ion · metal · 24 copies · chains A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X
- EDO · 1,2-ethanediol · additive · 6 copies · chains A, E, F, I, J, M, N, Q, R
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8KTX6
- Elsewhere: RCSB PDB 5EUJ · PDBe 5EUJ · UniProt Q8KTX6
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