MolNFT v2 · #117063 · protein
Crystal structure of Striga KAI2-like protein in complex with karrikin
5DNU: “Crystal structure of Striga KAI2-like protein in complex with karrikin”. X-ray diffraction at 1.2, 3 ligands (KKN, BEZ, NA). MolNFT v2 #117063 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5DNU
- Type
- protein
- Length
- 267 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.2
- Source
- Striga hermonthica
- Ligands
- KKN, BEZ, NA
Structure
x-ray diffraction · resolution 1.2 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 267 | — | — |
Ligands and binding sites
- KKN · 3-methyl-2H-furo[2,3-c]pyran-2-one · ligand · chains A
- BEZ · Benzoic acid · ligand · chains A
- NA · Sodium ion · metal · 3 copies · chains A
- FMT · Formic acid · additive · 9 copies · chains A
- EDO · 1,2-ethanediol · additive · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5DNU · Crystal structure of striga KAI2-like protein in complex with karrikin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5DNU · PDBe 5DNU
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