MolNFT v2 · #116944 · protein
Crystal structure of a 5'-METHYLTHIOADENOSINE/S-adenosylhomocysteine (MTA/SAH) nucleosidase (mtan) from colwellia psychrerythraea 34H (CPS_4743, target psi-029300) in complex with adenine at 2.27 a resolution
5DK6: “Crystal structure of a 5'-METHYLTHIOADENOSINE/S-adenosylhomocysteine (MTA/SAH) nucleosidase (mtan) from…”. X-ray diffraction at 2.27, 1 ligand (ADE). MolNFT v2 #116944 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5DK6
- Type
- protein
- Length
- 243 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.27
- Source
- Colwellia psychrerythraea
- UniProt
- Q47UY5
- Ligands
- ADE
Structure
x-ray diffraction · resolution 2.27 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 243 | — | Q47UY5 |
Ligands and binding sites
- ADE · Adenine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5DK6 · Crystal structure of a 5'-METHYLTHIOADENOSINE/S-adenosylhomocysteine (MTA/SAH)… · the same entry in another collection · chain A against A, TM-score 1.00
- Q47UY5 · AlphaFold monomer V2.0 prediction for 5'-METHYLTHIOADENOSINE/S-adenosylhomocysteine… · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q47UY5
- Elsewhere: RCSB PDB 5DK6 · PDBe 5DK6 · UniProt Q47UY5
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