MolNFT v2 · #116943 · protein

Crystal structure of CRN-4-MES complex

5DK5: “Crystal structure of CRN-4-MES complex”. X-ray diffraction at 2.1, 2 ligands (ZN, MG). MolNFT v2 #116943 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5DK5
Type: protein
Length: 589 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.1
Source: Caenorhabditis elegans
UniProt: Q10905
Ligands: ZN, MG

Structure

x-ray diffraction · resolution 2.1 · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	294	—	Q10905
B	—	protein	295	—	Q10905

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A, B
MG · Magnesium ion · metal · 2 copies · chains A, B
IPA · Isopropyl alcohol · additive · 7 copies · chains A, B
MES · 2-(N-morpholino)-ethanesulfonic acid · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5DK5 · Crystal structure of crn-4-mes complex · the same entry in another collection · chain A against A, TM-score 1.00
Q10905 · AlphaFold monomer V2.0 prediction for cell death-related nuclease 4 (Q10905) · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q10905
Elsewhere: RCSB PDB 5DK5 · PDBe 5DK5 · UniProt Q10905

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