MolNFT v2 · #116939 · protein

S. erythraea trypsin mixed catalytic intermediate

5DK1: “S. erythraea trypsin mixed catalytic intermediate”. X-ray diffraction at 0.938. MolNFT v2 #116939 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5DK1
Type: protein
Length: 230 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 0.938
Source: Saccharopolyspora erythraea
Molecule: Trypsin
EC: 3.4.21.4
UniProt: P24664

Structure

x-ray diffraction · resolution 0.938 · 1 distinct chain · 16% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Trypsin (EC 3.4.21.4)	protein	230	16% helix, 35% strand	P24664

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

5DK1 · S. erythraea trypsin mixed catalytic intermediate · the same entry in another collection · chain A against A, TM-score 1.00
P24664 · AlphaFold monomer V2.0 prediction for trypsin (P24664) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P24664
Elsewhere: RCSB PDB 5DK1 · PDBe 5DK1 · UniProt P24664

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