MolNFT v2 · #116932 · protein
Crystal structure of LOV2 (C450A) domain in complex with Zdk3
5DJU: “Crystal structure of LOV2 (C450A) domain in complex with Zdk3”. X-ray diffraction at 2.1, 2 ligands (FMN, CL). MolNFT v2 #116932 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5DJU
- Type
- protein
- Length
- 400 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.1
- Source
- Avena sativa; Staphylococcus aureus
- UniProt
- O49004
- Ligands
- FMN, CL
Structure
x-ray diffraction · resolution 2.1 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, D | — | protein | 55 | — | — |
| A, C | — | protein | 145 | — | O49004 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · 2 copies · chains A, C
- CL · Chloride ion · ion · 5 copies · chains B, A, D, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5DJU · Crystal structure of LOV2 (C450A) domain in complex with ZDK3 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O49004
- Elsewhere: RCSB PDB 5DJU · PDBe 5DJU · UniProt O49004
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