MolNFT v2 · #116321 · protein
Crystal structure of maize PDRP bound with AMP and Hg2+
5D1F: “Crystal structure of maize PDRP bound with AMP and Hg2+”. X-ray diffraction at 3.4, 3 ligands (AMP, HG, MG). MolNFT v2 #116321 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5D1F
- Type
- protein
- Length
- 274 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.4
- Source
- Zea mays
- UniProt
- Q195N6
- Ligands
- AMP, HG, MG
Structure
x-ray diffraction · resolution 3.4 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 274 | — | Q195N6 |
Ligands and binding sites
- AMP · Adenosine monophosphate · ligand · chains A
- HG · Mercury (II) ion · metal · chains A
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5D1F · Crystal structure of maize pdrp bound with AMP and HG2+ · the same entry in another collection · chain A against A, TM-score 1.00
- Q195N6 · AlphaFold monomer V2.0 prediction for pyruvate, phosphate dikinase regulatory protein… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q195N6
- Elsewhere: RCSB PDB 5D1F · PDBe 5D1F · UniProt Q195N6
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