MolNFT v1 · #99961 · protein
Crystal structure of a DUF4348 family protein (BVU_2238) from bacteroides vulgatus atcc 8482 at 1.99 a resolution
4MJF · Hypothetical protein: “Crystal structure of a DUF4348 family protein (BVU_2238) from bacteroides vulgatus atcc 8482 at 1.99 a…”. X-ray diffraction, 2 ligands (SO4, CL), 3 pockets (best druggability 0.57). MolNFT v1 #99961 on…
- PDB
- 4MJF
- Type
- protein
- Length
- 225 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein
- UniProt
- A6L2I4
- Ligands
- SO4, CL
- Pockets
- 3 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 20% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein | protein | 225 | 20% helix, 42% strand | A6L2I4 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 4 copies · chains A
- CL · Chloride ion · ion · 4 copies · chains A
- EDO · 1,2-ethanediol · additive · 5 copies · chains A
- CXS · 3-cyclohexyl-1-propylsulfonic acid · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 64 | 0.57 | 0.89 | 26 | EDO |
| 2 | 197 | 0.47 | 0.74 | 28 | CXS, EDO |
| 3 | 62 | 0.35 | 0.77 | 17 | SO4, CL |
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 4MJF · Crystal structure of a DUF4348 family protein (BVU_2238) from Bacteroides vulgatus ATCC… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A6L2I4
- Elsewhere: RCSB PDB 4MJF · PDBe 4MJF · UniProt A6L2I4
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