MolNFT v1 · #99876 · protein + DNA
Crystal structure of acheta domesticus densovirus
4MGU · Structural protein VP2: “Crystal structure of acheta domesticus densovirus”. X-ray diffraction, 4 pockets (best druggability 0.78). MolNFT v1 #99876 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4MGU
- Type
- protein + DNA
- Length
- 382 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Structural protein VP2; DNA (5'-D(P*TP*TP*T)-3')
- UniProt
- F2Y986
- Pockets
- 4 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 3% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Structural protein VP2 | protein | 379 | 3% helix, 19% strand | F2Y986 |
| C | DNA (5'-D(P*TP*TP*T)-3') | dna | 3 | — | — |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 683 | 0.78 | 0.83 | 109 | empty |
| 2 | 117 | 0.47 | 0.79 | 23 | empty |
| 3 | 66 | 0.44 | 0.82 | 20 | empty |
| 4 | 58 | 0.34 | 0.77 | 17 | empty |
Interfaces
1 interface between chains.
- A–C · 525 Ų buried · 3 hydrogen bonds · protein-nucleic
Compared structures
- 4MGU · Crystal structure of Acheta domesticus Densovirus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F2Y986
- Elsewhere: RCSB PDB 4MGU · PDBe 4MGU · UniProt F2Y986
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