MolNFT v1 · #99719 · protein
Structure of haze forming proteins in white wines: vitis vinifera thaumatin-like proteins
4MBT · VVTL1: “Structure of haze forming proteins in white wines: vitis vinifera thaumatin-like proteins”. X-ray diffraction, 2 pockets (best druggability 0.44). MolNFT v1 #99719 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 4MBT
- Type
- protein
- Length
- 396 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- VVTL1
- UniProt
- O04708
- Pockets
- 2 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 11% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | VVTL1 | protein | 198 | 11% helix, 37% strand | O04708 |
Ligands and binding sites
- GOL · Glycerol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 195 | 0.44 | 0.74 | 30 | empty |
| 2 | 76 | 0.29 | 0.72 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 168 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 16 disulfide (disulfide).
Compared structures
- 4MBT · Structure of haze forming proteins in white wines: Vitis vinifera thaumatin-like proteins · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O04708
- Elsewhere: RCSB PDB 4MBT · PDBe 4MBT · UniProt O04708
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