MolNFT v1 · #99699 · protein
Crystal structure of a viral DNA glycosylase
4MB7 · Endonuclease 8-like L720: “Crystal structure of a viral DNA glycosylase”. X-ray diffraction, 2 ligands (ZN, SO4), 1 pocket (best druggability 0.48). MolNFT v1 #99699 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4MB7
- Type
- protein
- Length
- 273 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endonuclease 8-like L720
- EC
- 4.2.99.18, 3.2.2.23
- UniProt
- Q5UNW7
- Ligands
- ZN, SO4
- Pockets
- 1 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endonuclease 8-like L720 (EC 4.2.99.18, 3.2.2.23) | protein | 273 | 33% helix, 27% strand | Q5UNW7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 215 | 0.48 | 0.74 | 29 | SO4 |
Compared structures
- 4MB7 · Crystal Structure of a viral DNA glycosylase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5UNW7
- Elsewhere: RCSB PDB 4MB7 · PDBe 4MB7 · UniProt Q5UNW7
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